Rare Daily Staff

Jumping genes can cause genetic changes in some patients with undiagnosed neurodevelopmental diseases, researchers report from the largest study of its kind into childhood developmental disorders.

The research from the Wellcome Sanger Institute and its collaborators in the National Health Service (NHS) Regional Genetics services in the United Kingdom enabled genetic diagnoses for three children with previously undiagnosed rare developmental diseases who were enrolled in the Deciphering Developmental Disorders project.

The study appears in the October 11 issue of Nature Communications and is a step towards providing explanations for additional families with children with undiagnosed neurodevelopmental disorders.

Every year in the United Kingdom, thousands of babies are born with errors in their DNA that mean they do not develop normally. These genetic mutations can lead to conditions such as intellectual disability, epilepsy, autism, or heart defects. There are more than 1,000 recognized genetic causes, however many individual developmental disorders are so rare that the genetic causes are not known.

The Deciphering Developmental Disorders project was launched in 2010 and aims to provide genetic diagnoses for the families of children with severe undiagnosed developmental disorders. In this study, the researchers studied the genomes of nearly 10,000 children enrolled in the project, looking for jumping genes that were not present in the parents.

Jumping genes, known as transposons, are pieces of DNA that can jump around from place to place in the genome. These genomic nomads can sometimes land in the middle of genes and stop them working, however it wasn’t previously known how often transposons lead to rare developmental disorders.

The researchers found jumping genes were likely to be the cause of the developmental disorder in three previously undiagnosed patients. The transposons had jumped into different genes in each patient, preventing them from functioning properly. The study also showed a transposon in a fourth patient who had been diagnosed previously.

Diagnoses are extremely important for people as they allow families with the same genetic conditions to meet up and access support. They also allow families to understand the risk for any further children they may have.

“This is the first time we have been able to estimate the contribution of jumping genes, known as transposons, in a large sequencing cohort of rare developmental disorders,” said Eugene Gardner, the first author from the Wellcome Sanger Institute. “We found that transposons were the likely cause of the symptoms of four of the 9,738 patients, three of whom had not had previous diagnoses. These are significant diagnoses for the families involved, and this study is another step along the path to understanding the causes of developmental disorders.”

In order to carry out this study, the scientists developed and validated an analytical pathway that could quickly assess patient genomes at scale, looking for transposon-created variants. This software is openly available for academic use and could be used to help diagnose rare transposon events in future patients.

“Previously, the role of transposons in rare developmental disorders has been poorly understood, and we have developed a strategy to analyze patient genomes for transposons that cause their symptoms,” said Matthew Hurles, senior author from the Wellcome Sanger Institute. “Our study suggests that routine clinical sequencing could assess patient genomes for damaging transposon events, which could allow more children to be diagnosed.”

Photo: Eugene Gardner, the first author from the Wellcome Sanger Institute

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